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Trimmomatic is a popular software that perform several manipulations to prepare reads for Web/Point-and-click, Discovery Environment · DE Manual · GuideFor details on each trimming step and their parameters see the Trimmomatic manual. The tool is based on the Trimmomatic package. Trimmomatic version: 0.36 binary, source, and manual. Trimmomatic performs a variety of useful quality control tasks for Illumina paired-end and single-end Trimming with Trimmomatic. Trimming Exercise. Please copy the trimming directory from our shared folder cd $SCRATCH cp -r /scratch/courses/HITS Trimmomatic has a variety of options to trim your reads. For more information about the Trimmomatic arguments and options, see the Trimmomatic manual. See the Trimmomatic manual for all other options. cd # Make a directory for the trimmed reads mkdir trimmed cd trimmed # Run Trimmomatic Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bioinformatics, btu170. Downloading Trimmomatic Version 0.39: binary, source and manual.

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